.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "user-guide/usage/visualization/plot_2_cell.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_user-guide_usage_visualization_plot_2_cell.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_user-guide_usage_visualization_plot_2_cell.py:


***************
Plotting a cell
***************

This page explains how to use :py:func:`wulfric.PlotlyEngine.plot_cell` on the simple
example of the cubic cell

We use FCC cell as an example.

.. GENERATED FROM PYTHON SOURCE LINES 31-37

.. code-block:: Python


    import wulfric

    cell = wulfric.cell.SC_FCC(a=3)









.. GENERATED FROM PYTHON SOURCE LINES 38-39

To display the cell with the default settings use

.. GENERATED FROM PYTHON SOURCE LINES 39-46

.. code-block:: Python


    pe = wulfric.PlotlyEngine(_sphinx_gallery_fix=True)

    pe.plot_cell(cell=cell)

    pe.show()






.. raw:: html

    <div class="output_subarea output_html rendered_html output_result">
    <div>            <script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-AMS-MML_SVG"></script><script>if (window.MathJax && window.MathJax.Hub && window.MathJax.Hub.Config) {window.MathJax.Hub.Config({SVG: {font: "STIX-Web"}});}</script>                <script>window.PlotlyConfig = {MathJaxConfig: 'local'};</script>
            <script charset="utf-8" src="https://cdn.plot.ly/plotly-3.5.0.min.js" integrity="sha256-fHbNLP+GlIXN+efbQec78UkemUz3NJp7UmfGxC1tNxs=" crossorigin="anonymous"></script>                <div id="97b1abbe-ebf3-486f-b91d-b21df8eb27ca" class="plotly-graph-div" style="height:525px; width:100%;"></div>            <script>                window.PLOTLYENV=window.PLOTLYENV || {};                                if (document.getElementById("97b1abbe-ebf3-486f-b91d-b21df8eb27ca")) {                    Plotly.newPlot(                        "97b1abbe-ebf3-486f-b91d-b21df8eb27ca",                        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                       {"template":{"data":{"scatter":[{"type":"scatter"}]}},"scene":{"domain":{"x":[0.0,1.0],"y":[0.0,1.0]},"xaxis":{"range":[0.0,3.1500000000000004]},"yaxis":{"range":[0.0,3.1500000000000004]},"zaxis":{"range":[0.0,3.1500000000000004]},"aspectratio":{"x":1.0,"y":1.0,"z":1},"aspectmode":"manual"},"legend":{"yanchor":"bottom","y":1.0,"xanchor":"center","x":0.5}},                        {"responsive": true}                    )                };            </script>        </div>
    </div>
    <br />
    <br />

.. GENERATED FROM PYTHON SOURCE LINES 47-49

Legend and style
================

.. GENERATED FROM PYTHON SOURCE LINES 49-56

.. code-block:: Python


    pe = wulfric.PlotlyEngine(_sphinx_gallery_fix=True)

    pe.plot_cell(cell=cell, legend_label="Direct cubic cell", color="green")

    pe.show()






.. raw:: html

    <div class="output_subarea output_html rendered_html output_result">
    <div>            <script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-AMS-MML_SVG"></script><script>if (window.MathJax && window.MathJax.Hub && window.MathJax.Hub.Config) {window.MathJax.Hub.Config({SVG: {font: "STIX-Web"}});}</script>                <script>window.PlotlyConfig = {MathJaxConfig: 'local'};</script>
            <script charset="utf-8" src="https://cdn.plot.ly/plotly-3.5.0.min.js" integrity="sha256-fHbNLP+GlIXN+efbQec78UkemUz3NJp7UmfGxC1tNxs=" crossorigin="anonymous"></script>                <div id="b6132742-8255-47eb-8da5-de48a2109a3d" class="plotly-graph-div" style="height:525px; width:100%;"></div>            <script>                window.PLOTLYENV=window.PLOTLYENV || {};                                if (document.getElementById("b6132742-8255-47eb-8da5-de48a2109a3d")) {                    Plotly.newPlot(                        "b6132742-8255-47eb-8da5-de48a2109a3d",                        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cell","showlegend":true,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAAAAA=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAACEAAAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAAAAA=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAACEAAAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAAAAA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"muvspnlgtg","line":{"color":"green"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAACEAAAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"}],                        {"template":{"data":{"scatter":[{"type":"scatter"}]}},"scene":{"domain":{"x":[0.0,1.0],"y":[0.0,1.0]},"xaxis":{"range":[0.0,3.1500000000000004]},"yaxis":{"range":[0.0,3.1500000000000004]},"zaxis":{"range":[0.0,3.1500000000000004]},"aspectratio":{"x":1.0,"y":1.0,"z":1},"aspectmode":"manual"},"legend":{"yanchor":"bottom","y":1.0,"xanchor":"center","x":0.5}},                        {"responsive": true}                    )                };            </script>        </div>
    </div>
    <br />
    <br />

.. GENERATED FROM PYTHON SOURCE LINES 57-59

Hiding lattice vectors
======================

.. GENERATED FROM PYTHON SOURCE LINES 59-66

.. code-block:: Python


    pe = wulfric.PlotlyEngine(_sphinx_gallery_fix=True)

    pe.plot_cell(cell=cell, plot_vectors=False)

    pe.show()






.. raw:: html

    <div class="output_subarea output_html rendered_html output_result">
    <div>            <script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js?config=TeX-AMS-MML_SVG"></script><script>if (window.MathJax && window.MathJax.Hub && window.MathJax.Hub.Config) {window.MathJax.Hub.Config({SVG: {font: "STIX-Web"}});}</script>                <script>window.PlotlyConfig = {MathJaxConfig: 'local'};</script>
            <script charset="utf-8" src="https://cdn.plot.ly/plotly-3.5.0.min.js" integrity="sha256-fHbNLP+GlIXN+efbQec78UkemUz3NJp7UmfGxC1tNxs=" crossorigin="anonymous"></script>                <div id="2b0e51c9-1bbf-4488-95a7-5749ce6914ae" class="plotly-graph-div" style="height:525px; width:100%;"></div>            <script>                window.PLOTLYENV=window.PLOTLYENV || {};                                if (document.getElementById("2b0e51c9-1bbf-4488-95a7-5749ce6914ae")) {                    Plotly.newPlot(                        "2b0e51c9-1bbf-4488-95a7-5749ce6914ae",                        [{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAAAAA=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAACEAAAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAAAAA=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAACEAAAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAAAAA=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAD4Pw=="},"z":{"dtype":"f8","bdata":"AAAAAAAAAAAAAAAAAAD4Pw=="},"type":"scatter3d","scene":"scene"},{"hoverinfo":"none","legendgroup":"hamdtgostf","line":{"color":"#000000"},"mode":"lines","showlegend":false,"x":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"y":{"dtype":"f8","bdata":"AAAAAAAACEAAAAAAAAAIQA=="},"z":{"dtype":"f8","bdata":"AAAAAAAA+D8AAAAAAAAIQA=="},"type":"scatter3d","scene":"scene"}],                        {"template":{"data":{"scatter":[{"type":"scatter"}]}},"scene":{"domain":{"x":[0.0,1.0],"y":[0.0,1.0]},"xaxis":{"range":[0.0,3.1500000000000004]},"yaxis":{"range":[0.0,3.1500000000000004]},"zaxis":{"range":[0.0,3.1500000000000004]},"aspectratio":{"x":1.0,"y":1.0,"z":1},"aspectmode":"manual"},"legend":{"yanchor":"bottom","y":1.0,"xanchor":"center","x":0.5}},                        {"responsive": true}                    )                };            </script>        </div>
    </div>
    <br />
    <br />

.. GENERATED FROM PYTHON SOURCE LINES 67-72

Shifting origin point
=====================

By default lattice vectors are plotted from the :math:`(0, 0, 0)` of the global
of the global reference frame. One can shift this reference point.

.. GENERATED FROM PYTHON SOURCE LINES 72-80

.. code-block:: Python


    pe = wulfric.PlotlyEngine(_sphinx_gallery_fix=True)

    # shift is given in the absolute units of the global reference frame
    pe.plot_cell(cell=cell, shift=(1, -1, 0.5))

    pe.show()






.. raw:: html

    <div class="output_subarea output_html rendered_html output_result">
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    </div>
    <br />
    <br />

.. GENERATED FROM PYTHON SOURCE LINES 81-85

Two cells
=========
One can plot any number of cells on one instance of :py:class:`wulfric.PlotlyEngine`.
For example, one can plot direct and reciprocal cell together

.. GENERATED FROM PYTHON SOURCE LINES 85-99

.. code-block:: Python


    pe = wulfric.PlotlyEngine(_sphinx_gallery_fix=True)

    # Plot direct cell
    pe.plot_cell(cell=cell, legend_label="Direct cell", color="blue")

    # Get reciprocal cell
    rcell = wulfric.cell.get_reciprocal(cell=cell)

    # Plot reciprocal cell
    pe.plot_cell(cell=rcell, legend_label="Reciprocal cell", color="red")

    pe.show()






.. raw:: html

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    </div>
    <br />
    <br />


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.192 seconds)


.. _sphx_glr_download_user-guide_usage_visualization_plot_2_cell.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_2_cell.ipynb <plot_2_cell.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_2_cell.py <plot_2_cell.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_2_cell.zip <plot_2_cell.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_